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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST055614
species: Populus trichocarpa
miRNA family: MIRf950
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGCTGCACCCTTCTCGTTA

miRNA*
GCGTGGAGGGTGTAGCCGTGG

mismatches: 3
bulges: 0

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pre-miRNA
TCACTACTCTGGAACTGTTTGCCCTGAGTTTAAGCGTGGAGGGTGTAGCCGTGGAGAGAATTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTGCAC
CCTTCTCGTTA
TCGAACCGAGGCTTGCAAAGATGGCAAGAA


dot-bracket secondary structure
.....((((.((.........))..))))...((((.((((((((((((((..(((((.((((((((....)))))))).)))))......)))))))))
))))).)))).
(((...)))..(((((.......)))))..



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10824-akr: 1e-53

microPC no hits
UniProt sp|O82307|C3H23_ARATH: 2e-19

RFAM no hits
most similar mature miRNAs

Identical with: ptc-miRf10824-akr from PMRD (MNEST052646)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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